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1

Is cooperative oxygen binding by hemoglobin really understood?

William A. Eaton, Eric R. Henry, James Hofrichter, Andrea Mozzarelli

Journal:

Rendiconti Lincei

Year:

2006

Language:

english

File:

PDF, 290 KB

english, 2006

2

Evolution of allosteric models for hemoglobin

William A. Eaton, Eric R. Henry, James Hofrichter, Stefano Bettati, Cristiano Viappiani, Andrea Mozzarelli

Journal:

Year:

2007

Language:

english

File:

PDF, 1.47 MB

english, 2007

3

Muscle and meat: New horizons and applications for proteomics on a farm to fork perspective

Paredi, Gianluca, Sentandreu, Miguel-Angel, Mozzarelli, Andrea, Fadda, Silvina, Hollung, Kristin, de Almeida, André Martinho

Journal:

Journal of Proteomics

Year:

2013

Language:

english

File:

PDF, 1.33 MB

english, 2013

4

Cyclopropane derivatives as potential human serine racemase inhibitors: unveiling novel insights into a difficult target

Beato, Claudia, Pecchini, Chiara, Cocconcelli, Chiara, Campanini, Barbara, Marchetti, Marialaura, Pieroni, Marco, Mozzarelli, Andrea, Costantino, Gabriele

Journal:

Journal of Enzyme Inhibition and Medicinal Chemistry

Year:

2015

Language:

english

File:

PDF, 650 KB

english, 2015

5

Proteomics of Parma Dry-Cured Ham: Analysis of Salting Exudates

Paredi, Gianluca, Benoni, Roberto, Pighini, Giovanni, Ronda, Luca, Dowle, Adam, Ashford, David, Thomas, Jerry, Saccani, Giovanna, Virgili, Roberta, Mozzarelli, Andrea

Journal:

Journal of Agricultural and Food Chemistry

Year:

2017

Language:

english

File:

PDF, 4.34 MB

english, 2017

6

Oxygen binding by single crystals of hemoglobin: The problem of cooperativity and inequivalence of alpha and beta subunits

Stefano Bettati, Andrea Mozzarelli, Gian Luigi Rossi, Antonio Tsuneshige, Takashi Yonetani, William A. Eaton, Eric R. Henry

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1996

Language:

english

File:

PDF, 1.15 MB

english, 1996

7

Complexity in Modeling and Understanding Protonation States: Computational Titration of HIV-1-Protease–Inhibitor Complexes

Ashutosh Tripathi, Micaela Fornabaio, Francesca Spyrakis, Andrea Mozzarelli, Pietro Cozzini, Glen E. Kellogg

Journal:

Chemistry & Biodiversity

Year:

2007

Language:

english

File:

PDF, 325 KB

english, 2007

8

Oxygen binding to Arabidopsis thaliana AHb2 nonsymbiotic hemoglobin: evidence for a role in oxygen transport

Francesca Spyrakis, Stefano Bruno, Axel Bidon-Chanal, Francisco Javier Luque, Stefania Abbruzzetti, Cristiano Viappiani, Paola Dominici, Andrea Mozzarelli

Journal:

Year:

2011

Language:

english

File:

PDF, 658 KB

english, 2011

9

Oxygen and nitric oxide rebinding kinetics in nonsymbiotic hemoglobin AHb1 from Arabidopsis thaliana

Stefania Abbruzzetti, Serena Faggiano, Francesca Spyrakis, Stefano Bruno, Andrea Mozzarelli, Alessandra Astegno, Paola Dominici, Cristiano Viappiani

Journal:

Year:

2011

Language:

english

File:

PDF, 251 KB

english, 2011

10

Energy-based prediction of amino acid-nucleotide base recognition

Anna Marabotti, Francesca Spyrakis, Angelo Facchiano, Pietro Cozzini, Saverio Alberti, Glen E. Kellogg, Andrea Mozzarelli

Journal:

Journal of Computational Chemistry

Year:

2008

Language:

english

File:

PDF, 738 KB

english, 2008

11

Time-resolved fluorescence of tryptophan synthase

Silvia Vaccari, Sara Benci, Alessio Peracchi, Andrea Mozzarelli

Journal:

Biophysical Chemistry

Year:

1996

Language:

english

File:

PDF, 1.26 MB

english, 1996

12

Hemoglobin-based oxygen carriers as blood substitutes

Andrea Mozzarelli

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2008

Language:

english

File:

PDF, 110 KB

english, 2008

13

Polymerized and polyethylene glycol-conjugated hemoglobins: A globin-based calibration curve for dynamic light scattering analysis

Serena Faggiano, Luca Ronda, Stefano Bruno, Hanna Jankevics, Andrea Mozzarelli

Journal:

Analytical Biochemistry

Year:

2010

Language:

english

File:

PDF, 381 KB

english, 2010

14

Electrophoretic analysis of PEGylated hemoglobin-based blood substitutes

Luca Ronda, Barbara Pioselli, Stefano Bruno, Serena Faggiano, Andrea Mozzarelli

Journal:

Analytical Biochemistry

Year:

2011

Language:

english

File:

PDF, 622 KB

english, 2011

15

Allosteric communication between alpha and beta subunits of tryptophan synthase: Modelling the open-closed transition of the alpha subunit

Francesca Spyrakis, Samanta Raboni, Pietro Cozzini, Stefano Bettati, Andrea Mozzarelli

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2006

Language:

english

File:

PDF, 910 KB

english, 2006

16

Hemoglobin, an “evergreen” red protein

Stefano Bettati, Cristiano Viappiani, Andrea Mozzarelli

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2009

Language:

english

File:

PDF, 515 KB

english, 2009

17

Exploring methionine γ-lyase structure-function relationship via microspectrophotometry and X-ray crystallography

Luca Ronda, Natalia P. Bazhulina, Elena A. Morozova, Svetlana V. Revtovich, Vladimir O. Chekhov, Alexei D. Nikulin, Tatyana V. Demidkina, Andrea Mozzarelli

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2011

Language:

english

File:

PDF, 1.05 MB

english, 2011

18

Exploring and exploiting allostery: Models, evolution, and drug targeting

Alessio Peracchi, Andrea Mozzarelli

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2011

Language:

english

File:

PDF, 1.06 MB

english, 2011

19

Ligand migration and hexacoordination in type 1 non-symbiotic rice hemoglobin

Nitin Kumar Bisht, Stefania Abbruzzetti, Sheetal Uppal, Stefano Bruno, Francesca Spyrakis, Andrea Mozzarelli, Cristiano Viappiani, Suman Kundu

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2011

Language:

english

File:

PDF, 1.58 MB

english, 2011

20

Protein crystal microspectrophotometry

Luca Ronda, Stefano Bruno, Stefano Bettati, Andrea Mozzarelli

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2011

Language:

english

File:

PDF, 813 KB

english, 2011

21

X-ray crystallography marries spectroscopy to unveil structure and function of biological macromolecules

A.R. Pearson, Andrea Mozzarelli

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2011

Language:

english

File:

PDF, 206 KB

english, 2011

22

The consequences of scoring docked ligand conformations using free energy correlations

Francesca Spyrakis, Alessio Amadasi, Micaela Fornabaio, Donald J. Abraham, Andrea Mozzarelli, Glen E. Kellogg, Pietro Cozzini

Journal:

European Journal of Medicinal Chemistry

Year:

2007

Language:

english

File:

PDF, 850 KB

english, 2007

23

Getting it right: modeling of pH, solvent and “nearly” everything else in virtual screening of biological targets

Glen E Kellogg, Micaela Fornabaio, Francesca Spyrakis, Alessio Lodola, Pietro Cozzini, Andrea Mozzarelli, Donald J Abraham

Journal:

Journal of Molecular Graphics and Modelling

Year:

2004

Language:

english

File:

PDF, 295 KB

english, 2004

24

Tools for building a comprehensive modeling system for virtual screening under real biological conditions: The Computational Titration algorithm

Glen E. Kellogg, Micaela Fornabaio, Deliang L. Chen, Donald J. Abraham, Francesca Spyrakis, Pietro Cozzini, Andrea Mozzarelli

Journal:

Journal of Molecular Graphics and Modelling

Year:

2006

Language:

english

File:

PDF, 267 KB

english, 2006

25

Enhanced geminate ligand rebinding upon photo-dissociation of silica gel-embedded myoglobin–CO

Stefania Abbruzzetti, Cristiano Viappiani, Stefano Bruno, Andrea Mozzarelli

Journal:

Chemical Physics Letters

Year:

2001

Language:

english

File:

PDF, 102 KB

english, 2001

26

HINT predictive analysis of binding between retinol binding protein and hydrophobic ligands

Anna Marabotti, Lara Balestreri, Pietro Cozzini, Andrea Mozzarelli, Glen E. Kellogg, Donald J. Abraham

Journal:

Bioorganic & Medicinal Chemistry Letters

Year:

2000

Language:

english

File:

PDF, 249 KB

english, 2000

27

Conformational probes of O-acetylserine sulfhydrylase: fluorescence of tryptophans 50 and 161

Sara Benci, Stefano Bettati, Silvia Vaccari, Giulio Schianchi, Andrea Mozzarelli, Paul F. Cook

Journal:

Journal of Photochemistry and Photobiology B: Biology

Year:

1999

Language:

english

File:

PDF, 1.12 MB

english, 1999

28

The molecular pathway for the allosteric regulation of tryptophan synthase

Samanta Raboni, Barbara Pioselli, Stefano Bettati, Andrea Mozzarelli

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2003

Language:

english

File:

PDF, 290 KB

english, 2003

29

Low affinity PEGylated hemoglobin fromTrematomus bernacchii, a model for hemoglobin-based blood substitutes

Daniela Coppola, Stefano Bruno, Luca Ronda, Cristiano Viappiani, Stefania Abbruzzetti, Guido di Prisco, Cinzia Verde, Andrea Mozzarelli

Journal:

BMC Biochemistry

Year:

2011

Language:

english

File:

PDF, 631 KB

english, 2011

30

Energetics of the protein-DNA-water interaction

Francesca Spyrakis, Pietro Cozzini, Chiara Bertoli, Anna Marabotti, Glen E Kellogg, Andrea Mozzarelli

Journal:

BMC Structural Biology

Year:

2007

Language:

english

File:

PDF, 2.46 MB

english, 2007

31

Tyrosine phenol-lyase and tryptophan indole-lyase encapsulated in wet nanoporous silica gels: Selective stabilization of tertiary conformations

Barbara Pioselli, Stefano Bettati, Tatyana V. Demidkina, Lyudmila N. Zakomirdina, Robert S. Phillips, Andrea Mozzarelli

Journal:

Protein Science

Year:

2004

Language:

english

File:

PDF, 36 KB

english, 2004

32

Allosteric effectors do not alter the oxygen affinity of hemoglobin crystals

Andrea Mozzarelli, Claudio Rivetti, Gian Luigi Rossi, William A. Eaton, Eric R. Henry

Journal:

Protein Science

Year:

1997

Language:

english

File:

PDF, 581 KB

english, 1997

33

Water: How to evaluate its contribution in protein–ligand interactions

Pietro Cozzini, Micaela Fornabaio, Andrea Mozzarelli, Francesca Spyrakis, Glen E. Kellogg, Donald J. Abraham

Journal:

International Journal of Quantum Chemistry

Year:

2006

Language:

english

File:

PDF, 142 KB

english, 2006

34

Exploring the pyridoxal 5′-phosphate-dependent enzymes

Andrea Mozzarelli, Stefano Bettati

Journal:

The Chemical Record

Year:

2006

Language:

english

File:

PDF, 440 KB

english, 2006

35

Tryptophan synthase: a mine for enzymologists

Samanta Raboni, Stefano Bettati, Andrea Mozzarelli

Journal:

Cellular and Molecular Life Sciences

Year:

2009

Language:

english

File:

PDF, 476 KB

english, 2009

36

Environment effects on the oscillatory unfolding kinetics of GFP

Fabio Cannone, Maddalena Collini, Giuseppe Chirico, Giancarlo Baldini, Stefano Bettati, Barbara Campanini, Andrea Mozzarelli

Journal:

European Biophysics Journal

Year:

2007

Language:

english

File:

PDF, 325 KB

english, 2007

37

Human kynurenine aminotransferase II – reactivity with substrates and inhibitors

Elisabetta Passera, Barbara Campanini, Franca Rossi, Valentina Casazza, Menico Rizzi, Roberto Pellicciari, Andrea Mozzarelli

Journal:

Year:

2011

Language:

english

File:

PDF, 483 KB

english, 2011

38

Crystals of haemoglobin with the T quaternary structure bind oxygen noncooperatively with no Bohr effect

Mozzarelli, Andrea, Rivetti, Claudio, Rossi, Gian Luigi, Henry, Eric R., Eaton, William A.

Journal:

Year:

1991

File:

PDF, 396 KB

1991

39

10.1038/7586

Eaton, William A., Henry, Eric. R., Hofrichter, James, Mozzarelli, Andrea

Journal:

Natural Structural Biology

Year:

1999

Language:

english

File:

PDF, 289 KB

english, 1999

40

Correlation of protein functional properties in the crystal and in solution: The case study of T-state hemoglobin

Robert W. Noble, Laura D. Kwiatkowski, Hilda L. Hui, Stefano Bruno, Stefano Bettati, Andrea Mozzarelli

Journal:

Protein Science

Year:

2002

Language:

english

File:

PDF, 66 KB

english, 2002

41

Tyrosine phenol-lyase and tryptophan indole-lyase encapsulated in wet nanoporous silica gels: Selective stabilization of tertiary conformations

Barbara Pioselli, Stefano Bettati, Tatyana V. Demidkina, Lyudmila N. Zakomirdina, Robert S. Phillips, Andrea Mozzarelli

Journal:

Protein Science

Year:

2004

Language:

english

File:

PDF, 317 KB

english, 2004

42

Interaction of serine acetyltransferase with O-acetylserine sulfhydrylase active site: Evidence from fluorescence spectroscopy

Barbara Campanini, Francesca Speroni, Enea Salsi, Paul F. Cook, Steven L. Roderick, Bin Huang, Stefano Bettati, Andrea Mozzarelli

Journal:

Protein Science

Year:

2005

Language:

english

File:

PDF, 555 KB

english, 2005

43

Circular dichroism spectroscopy of tertiary and quaternary conformations of human hemoglobin entrapped in wet silica gels

Luca Ronda, Stefano Bruno, Cristiano Viappiani, Stefania Abbruzzetti, Andrea Mozzarelli, Kenneth C. Lowe, Stefano Bettati

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 225 KB

english, 2006

44

Site-directed mutations of human hemoglobin at residue 35β: A residue at the intersection of the α1β1, α1β2, and α1α2 interfaces

Jeffrey S. Kavanaugh, Jamie A. Weydert, Paul H. Rogers, Arthur Arnone, Hilda L. Hui, Anita M. Wierzba, Laura D. Kwiatkowski, Paul Paily, Robert W. Noble, Stefano Bruno, Andrea Mozzarelli

Journal:

Protein Science

Year:

2001

Language:

english

File:

PDF, 212 KB

english, 2001

45

High and low oxygen affinity conformations of T state hemoglobin

Stefano Bruno, Maria Bonaccio, Stefano Bettati, Claudio Rivetti, Cristiano Viappiani, Stefania Abbruzzetti, Andrea Mozzarelli

Journal:

Protein Science

Year:

2001

Language:

english

File:

PDF, 66 KB

english, 2001

46

Dynamics of green fluorescent protein mutant2 in solution, on spin-coated glasses, and encapsulated in wet silica gels

Giuseppe Chirico, Fabio Cannone, Sabrina Beretta, Alberto Diaspro, Barbara Campanini, Stefano Bettati, Roberta Ruotolo, Andrea Mozzarelli

Journal:

Protein Science

Year:

2002

Language:

english

File:

PDF, 164 KB

english, 2002

47

Oxygen binding by α(Fe2+)2β(Ni2+)2 hemoglobin crystals

Stefano Bruno, Stefano Bettati, Michele Manfredini, Andrea Mozzarelli, Martino Bolognesi, Daniela Deriu, Camillo Rosano, Antonio Tsuneshige, Takashi Yonetani, Eric R. Henry

Journal:

Protein Science

Year:

2000

Language:

english

File:

PDF, 1.14 MB

english, 2000

48

Microspectrophotometry for structural enzymology

Arwen R Pearson, Andrea Mozzarelli, Gian Luigi Rossi

Journal:

Current Opinion in Structural Biology

Year:

2004

Language:

english

File:

PDF, 317 KB

english, 2004

49

Unfolding of pyridoxal 5′-phosphate-dependent O-acetylserine sulfhydrylase probed by time-resolved tryptophan fluorescence

Stefano Bettati, Barbara Campanini, Simona Vaccari, Andrea Mozzarelli, Giulio Schianchi, Theodore L. Hazlett, Enrico Gratton, Sara Benci

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

2002

Language:

english

File:

PDF, 423 KB

english, 2002

50

Time-resolved fluorescence of O-acetylserine sulfhydrylase

Sara Benci, Silvia Vaccari, Andrea Mozzarelli, Paul F. Cook

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

1999

Language:

english

File:

PDF, 367 KB

english, 1999